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#rnaseq

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Marc Robinson-Rechavi<p>Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!<br><a href="https://tinyurl.com/3aewk286" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">tinyurl.com/3aewk286</span><span class="invisible"></span></a> <br><a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EvoDevo</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PopulationGenomics</span></a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PostDoc</span></a></p>
Marc Robinson-Rechavi<p>Nice RNAseq atlas of small but important crustacean Daphnia pulex, and study of "selection operating on genes expressed in different tissues" <a href="https://www.biorxiv.org/content/10.1101/2025.05.01.651673v1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">25.05.01.651673v1</span></a> <a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EvoDevo</span></a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MolecularEvolution</span></a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> <a href="https://ecoevo.social/tags/Daphnia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Daphnia</span></a> <a href="https://ecoevo.social/tags/Crustacean" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Crustacean</span></a></p>
de.NBI / ELIXIR-DE<p>Next <span class="h-card" translate="no"><a href="https://mstdn.science/@deNBI" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>deNBI</span></a></span> <a href="https://mstdn.science/tags/training" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>training</span></a> course by <span class="h-card" translate="no"><a href="https://xn--baw-joa.social/@galaxyfreiburg" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>galaxyfreiburg</span></a></span>: From Data to Discovery: <a href="https://mstdn.science/tags/Metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Metagenomics</span></a>, <a href="https://mstdn.science/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> - <a href="https://mstdn.science/tags/NGS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NGS</span></a> <a href="https://mstdn.science/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> with <span class="h-card" translate="no"><a href="https://mstdn.science/@galaxyproject" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>galaxyproject</span></a></span> (Freiburg, June 30 – July 4, 2025). Registration deadline: May 11. Read more: <a href="https://www.denbi.de/training-courses-2025/1883-from-data-to-discovery-metagenomics-rna-seq-ngs-bioinformatics-with-galaxy" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">denbi.de/training-courses-2025</span><span class="invisible">/1883-from-data-to-discovery-metagenomics-rna-seq-ngs-bioinformatics-with-galaxy</span></a></p>
PLOS Biology<p>Expression quantitative trait locus (eQTL) mapping studies are limited by the need to study a large number of individuals. This study develops a method to scale up <a href="https://fediscience.org/tags/eQTL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>eQTL</span></a> studies by performing single-nucleus <a href="https://fediscience.org/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> of <a href="https://fediscience.org/tags/Arabidopsis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Arabidopsis</span></a> pollen <span class="h-card" translate="no"><a href="https://fediscience.org/@PLOSBiology" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>PLOSBiology</span></a></span> <a href="https://plos.io/4jPZOzD" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">plos.io/4jPZOzD</span><span class="invisible"></span></a></p>
Pierre Lindenbaum<p>Heng Li's bliog: Short RNA-seq read alignment with minimap2 <a href="https://lh3.github.io/2025/04/18/short-rna-seq-read-alignment-with-minimap2" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">lh3.github.io/2025/04/18/short</span><span class="invisible">-rna-seq-read-alignment-with-minimap2</span></a><br> </p><p>"TL;DR: the new preset splice:sr in minimap2 can align short RNA-seq reads. It is similar to STAR in resource usage, approaches STAR in junction accuracy, and is overall better at SNP calling."</p><p><a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/alignment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alignment</span></a> <a href="https://genomic.social/tags/ngs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ngs</span></a> <a href="https://genomic.social/tags/mapping" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mapping</span></a></p>
nf-core<p>Pipeline release! nf-core/rnavar v1.1.0 - nf-core/rnavar 1.1.0 - Mighty Milano!</p><p>Please see the changelog: <a href="https://github.com/nf-core/rnavar/releases/tag/1.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/rnavar/rele</span><span class="invisible">ases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/gatk4" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gatk4</span></a> <a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/worflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>worflow</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Pierre Lindenbaum<p>asking for a friend: do you know any database/framework to visualize RNAseq data ? (just like <a href="https://github.com/broadinstitute/gnomad-browser" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/broadinstitute/gnom</span><span class="invisible">ad-browser</span></a> for WGS)</p><p><a href="https://genomic.social/tags/database" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>database</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
(((@amarois)))<p>Plaisir du samedi de perm à la BU: lecture de <a href="https://mamot.fr/tags/PGD" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PGD</span></a> "L. Gress, S. Maman-Haddad, N. Marty-Gasset, N. Vialaneix, A. Bonnet. Plan de gestion des données CO-LOcATION V. Finale. INRAE-UMR GenPhySE 2025 <a href="https://hal.inrae.fr/hal-05009536v1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">hal.inrae.fr/hal-05009536v1</span><span class="invisible"></span></a><br><a href="https://mamot.fr/tags/passionPGD" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>passionPGD</span></a> <a href="https://mamot.fr/tags/DMPporn" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DMPporn</span></a> <a href="https://mamot.fr/tags/researchdata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>researchdata</span></a> <a href="https://mamot.fr/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mamot.fr/tags/DMP" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DMP</span></a> <a href="https://mamot.fr/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> <a href="https://mamot.fr/tags/biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biology</span></a> <a href="https://mamot.fr/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>data</span></a></p>
nf-core<p>Pipeline release! nf-core/scrnaseq v4.0.0 - 4.0.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/scrnaseq/releases/tag/4.0.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/scrnaseq/re</span><span class="invisible">leases/tag/4.0.0</span></a></p><p><a href="https://mstdn.science/tags/10xgenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>10xgenomics</span></a> <a href="https://mstdn.science/tags/10xgenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>10xgenomics</span></a> <a href="https://mstdn.science/tags/alevin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alevin</span></a> <a href="https://mstdn.science/tags/bustools" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bustools</span></a> <a href="https://mstdn.science/tags/cellranger" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cellranger</span></a> <a href="https://mstdn.science/tags/kallisto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>kallisto</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/singlecell" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>singlecell</span></a> <a href="https://mstdn.science/tags/starsolo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>starsolo</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/denovotranscript/releases/tag/1.2.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/denovotrans</span><span class="invisible">cript/releases/tag/1.2.0</span></a></p><p><a href="https://mstdn.science/tags/denovoassembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>denovoassembly</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/transcriptome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>transcriptome</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
Bioconductor<p>🌍 Bioconductor Course, Kenya 2025 🎓</p><p>We’re thrilled to announce our first in-person Bioconductor course in Kenya, happening March 24–28, 2025, at the ILRI Campus in Nairobi!</p><p>This free, week-long course is for bioinformatics beginners, covering R, Bioconductor, and RNA-seq workflows, and aims to grow the Bioconductor community in Africa.</p><p>🔗 Apply now: <a href="https://buff.ly/40CJL02" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">buff.ly/40CJL02</span><span class="invisible"></span></a><br>🔗 Learn more: <a href="https://training.bioconductor.org/workshops/2025-03-Nairobi/index.html" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">training.bioconductor.org/work</span><span class="invisible">shops/2025-03-Nairobi/index.html</span></a> </p><p><a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Bioinformatics</span></a> <a href="https://genomic.social/tags/Carpentries" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Carpentries</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a></p>
Marc Robinson-Rechavi<p>We obtained <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> from tooth germs over the embryonic and postnatal period where the major events of morphogenesis occur, from bud, to cap, to bell stage until differentiation and enamel/dentin secretion, and obtained clusters of coexpressed genes per stage.</p>
nf-core<p>Pipeline release! nf-core/rnaseq v3.18.0 - nf-core/rnaseq v3.18.0 - Lithium Lynx!</p><p>Please see the changelog: <a href="https://github.com/nf-core/rnaseq/releases/tag/3.18.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/rnaseq/rele</span><span class="invisible">ases/tag/3.18.0</span></a></p><p><a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
victorjavierlo<p>Is it possible to transform RSEM to TPMs? <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/scrnaseq v3.0.0 - 3.0.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/scrnaseq/releases/tag/3.0.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/scrnaseq/re</span><span class="invisible">leases/tag/3.0.0</span></a></p><p><a href="https://mstdn.science/tags/10xgenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>10xgenomics</span></a> <a href="https://mstdn.science/tags/10xgenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>10xgenomics</span></a> <a href="https://mstdn.science/tags/alevin" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alevin</span></a> <a href="https://mstdn.science/tags/bustools" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bustools</span></a> <a href="https://mstdn.science/tags/cellranger" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cellranger</span></a> <a href="https://mstdn.science/tags/kallisto" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>kallisto</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/singlecell" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>singlecell</span></a> <a href="https://mstdn.science/tags/starsolo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>starsolo</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/denovotranscript v1.1.0 - nf-core/denovotranscript v1.1.0!</p><p>Please see the changelog: <a href="https://github.com/nf-core/denovotranscript/releases/tag/1.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/denovotrans</span><span class="invisible">cript/releases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/denovoassembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>denovoassembly</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/transcriptome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>transcriptome</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
victorjavierlo<p>🧬 Excited to share findings from a collaboration on <a href="https://genomic.social/tags/Alzheimer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Alzheimer</span></a>'s! 🧬 Our team contributed RNA-seq analysis to explore how FAAH inactivation influences neuroinflammation and microglial function. This study reveals a paradox: while FAAH inactivation enhances microglial activity, it also escalates inflammation in 5xFAD AD mice. Results could point to FAAH as a therapeutic target in AD! <a href="https://genomic.social/tags/Neuroinflammation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Neuroinflammation</span></a> <a href="https://genomic.social/tags/Microglia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Microglia</span></a> <a href="https://genomic.social/tags/Endocannabinoids" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Endocannabinoids</span></a> <a href="https://genomic.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNAseq</span></a> <a href="https://genomic.social/tags/ScienceCollab" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ScienceCollab</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p><p><a href="https://onlinelibrary.wiley.com/doi/10.1002/glia.24638" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">onlinelibrary.wiley.com/doi/10</span><span class="invisible">.1002/glia.24638</span></a></p>
nf-core<p>Pipeline release! nf-core/rnaseq v3.17.0 - nf-core/rnaseq v3.17.0 - Neon Newt!</p><p>Please see the changelog: <a href="https://github.com/nf-core/rnaseq/releases/tag/3.17.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/rnaseq/rele</span><span class="invisible">ases/tag/3.17.0</span></a></p><p><a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
victorjavierlo<p>Looking for advice on FDR thresholds in <a href="https://genomic.social/tags/GSEA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GSEA</span></a>: Do you typically use FDR &lt; 0.25 or FDR &lt; 0.05 to determine significance? How does your threshold choice change depending on permutation_type='phenotype' vs. permutation_type='gene_set'? <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a></p>
David Eccles 🌻🇵🇸6x🩹🛡️<p>Reminder for people doing single-cell sequencing work: where possible, try to validate your single-cell data before reporting on it.</p><p><a href="https://genomic.social/tags/STAR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>STAR</span></a> <a href="https://genomic.social/tags/SingleCell" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SingleCell</span></a> <a href="https://genomic.social/tags/cDNASeq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cDNASeq</span></a> <a href="https://genomic.social/tags/RNASeq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RNASeq</span></a></p>